| Season 1 | Episode 1 | Monkey See, Doggie Do | 1998-11-18 | 30 min |
| Season 1 | Episode 2 | Mommy Fearest | 1998-11-18 | 12 min |
| Season 1 | Episode 3 | Insect Inside | 1998-11-25 | 12 min |
| Season 1 | Episode 4 | Powerpuff Bluff | 1998-11-25 | 12 min |
| Season 1 | Episode 5 | Octi Evil | 1998-12-02 | 12 min |
| Season 1 | Episode 6 | Geshundfight | 1998-12-02 | 12 min |
| Season 1 | Episode 7 | Buttercrush | 1998-12-09 | 12 min |
| Season 1 | Episode 8 | Fuzzy Logic | 1998-12-09 | 12 min |
| Season 1 | Episode 9 | Boogie Frights | 1998-12-16 | 12 min |
| Season 1 | Episode 10 | Abracadaver | 1998-12-16 | 12 min |
| Season 1 | Episode 11 | Telephonies | 1998-12-23 | 12 min |
| Season 1 | Episode 12 | Tough Love | 1998-12-23 | 12 min |
| Season 1 | Episode 13 | Major Competition | 1999-01-06 | 12 min |
| Season 1 | Episode 14 | Mr. Mojo's Rising | 1999-01-06 | 12 min |
| Season 1 | Episode 15 | Pasta Makes Waste | 1999-01-13 | 12 min |
| Season 1 | Episode 16 | Ice Sore | 1999-01-13 | 12 min |
| Season 1 | Episode 17 | Bubblevicious | 1999-01-20 | 12 min |
| Season 1 | Episode 18 | The Bare Facts | 1999-01-20 | 12 min |
| Season 1 | Episode 19 | Cat Man Do | 1999-01-27 | 12 min |
| Season 1 | Episode 20 | Impeach Fuzz | 1999-01-27 | 12 min |
| Season 1 | Episode 21 | Just Another Manic Mojo | 1999-02-03 | 12 min |
| Season 1 | Episode 22 | Mime for a Change | 1999-02-03 | 12 min |
| Season 1 | Episode 23 | The Rowdyruff Boys | 1999-04-07 | 20 min |
| Season 1 | Episode 24 | Uh-Oh, Dynamo | 1999-05-26 | 20 min |
| Season 2 | Episode 1 | Stuck Up, Up, and Away / Schoolhouse Rocked | 1999-06-25 | 30 min |
| Season 2 | Episode 2 | Collect Her / Supper Villain | 1999-08-06 | 30 min |
| Season 2 | Episode 3 | Birthday Bash / Too Pooped to Puff | 1999-08-20 | 30 min |
| Season 2 | Episode 4 | Beat Your Greens / Down n' Dirty | 1999-09-10 | 30 min |
| Season 2 | Episode 5 | Dream Scheme / You Snooze You Lose | 1999-09-25 | 30 min |
| Season 2 | Episode 6 | Slave the Day / Los Dos Mojos | 1999-10-08 | 30 min |
| Season 2 | Episode 7 | A Very Special Blossom / Daylight Savings | 1999-11-26 | 30 min |
| Season 2 | Episode 8 | Mo Job / Pet Feud | 2000-02-13 | 30 min |
| Season 2 | Episode 9 | Imaginary Fiend / Cootie Gras | 2000-03-17 | 30 min |
| Season 2 | Episode 10 | The Powerpuff Girls' Best Rainy Day Adventure Ever / Just Desserts | 2000-04-28 | 30 min |
| Season 2 | Episode 11 | Twisted Sister / Cover Up | 2000-05-26 | 30 min |
| Season 2 | Episode 12 | Speed Demon / Mojo Jonesin' | 2000-06-02 | 30 min |
| Season 2 | Episode 13 | Something's a Ms. / Slumbering with the Enemy | 2000-06-30 | 30 min |
| Season 3 | Episode 1 | Fallen Arches / The Mane Event | 2000-07-28 | 30 min |
| Season 3 | Episode 2 | Town and Out / Child Fearing | 2000-08-18 | 30 min |
| Season 3 | Episode 3 | Criss-Cross Crisis | 2000-09-08 | 30 min |
| Season 3 | Episode 4 | Bubblevision / Bought and Scold | 2000-09-15 | 30 min |
| Season 3 | Episode 5 | Gettin' Twiggy with It / Cop Out | 2000-09-22 | 30 min |
| Season 3 | Episode 6 | Three Girls and a Monster / Monkey See, Doggie Two | 2000-10-06 | 30 min |
| Season 3 | Episode 7 | Jewel of the Aisle / Super Zeros | 2000-10-20 | 30 min |
| Season 3 | Episode 8 | Candy is Dandy / Catastrophe | 2000-11-10 | 30 min |
| Season 3 | Episode 9 | Hot Air Buffoon / Ploys R' Us | 2000-12-01 | 30 min |
| Season 3 | Episode 10 | The Headsucker's Moxy / Equal Fights | 2001-01-05 | 30 min |
| Season 3 | Episode 11 | Powerprof. | 2001-02-09 | 30 min |
| Season 3 | Episode 12 | Moral Decay / Meet the Beat-Alls | 2001-02-09 | 30 min |
| Season 3 | Episode 13 | Helter Shelter / Power Lunch | 2001-10-12 | 30 min |
| Season 4 | Episode 1 | Film Flam | 2001-04-20 | 30 min |
| Season 4 | Episode 2 | All Chalked Up | 2001-04-27 | 30 min |
| Season 4 | Episode 3 | Get Back, Jojo | 2001-05-04 | 30 min |
| Season 4 | Episode 4 | Super Friends | 2002-06-08 | 30 min |
| Season 4 | Episode 5 | Members Only | 2002-06-15 | 30 min |
| Season 4 | Episode 6 | Him Diddle Riddle | 2002-06-21 | 30 min |
| Season 4 | Episode 7 | Nano of the North | 2002-06-22 | 30 min |
| Season 4 | Episode 8 | Forced Kin | 2002-06-28 | 30 min |
| Season 4 | Episode 9 | Stray Bullet | 2002-07-05 | 30 min |
| Season 4 | Episode 10 | Knock It Off | 2002-07-12 | 30 min |
| Season 5 | Episode 1 | Keen on Keane / Not So Awesome Blossom | 2002-12-06 | 30 min |
| Season 5 | Episode 2 | Power-Noia | 2002-12-13 | 30 min |
| Season 5 | Episode 3 | Monstra-City / Shut the Pup Up | 2003-09-05 | 30 min |
| Season 5 | Episode 4 | Toast of the Town / Divide and Conquer | 2003-09-12 | 30 min |
| Season 5 | Episode 5 | Burglar Alarmed / Shotgun Wedding | 2003-09-19 | 30 min |
| Season 5 | Episode 6 | Save Mojo / Substitute Creature | 2003-09-26 | 30 min |
| Season 5 | Episode 7 | The Boys Are Back in Town | 2003-11-06 | 30 min |
| Season 5 | Episode 8 | Pee Pee G's / Boy Toys | 2003-11-13 | 30 min |
| Season 5 | Episode 9 | Seed No Evil / City of Clipsville | 2003-11-25 | 30 min |
| Season 5 | Episode 10 | Lying Around the House / Bubble Boy | 2004-01-09 | 30 min |
| Season 5 | Episode 11 | A Documentary / Girls Gone Mild | 2004-01-16 | 30 min |
| Season 5 | Episode 12 | Nuthin' Special / Neighbor Hood | 2005-03-25 | 30 min |
| Season 5 | Episode 13 | I See a Funny Cartoon in Your Future / Octi-Gone | 2005-03-25 | 30 min |
| Season 5 | Episode 14 | See Me, Feel Me, Gnomey | 2003-11-10 | 30 min |
| Season 6 | Episode 1 | Curses / Bang for Your Buck | 2004-04-02 | 30 min |
| Season 6 | Episode 2 | Silent Treatment / Sweet n Sour | 2004-04-09 | 30 min |
| Season 6 | Episode 3 | Prime Apes / Coupe d'Etat | 2004-04-16 | 30 min |
| Season 6 | Episode 4 | Makes Zen to Me / Say Uncle | 2004-04-23 | 30 min |
| Season 6 | Episode 5 | Reeking Havoc / Live and Let Dynamo | 2004-04-30 | 30 min |
| Season 6 | Episode 6 | Mo' Linguish / Oops, I Did It Again | 2004-05-07 | 30 min |
| Season 6 | Episode 7 | A Made Up Story | 2004-05-14 | 30 min |
| Season 6 | Episode 8 | Little Miss Interprets / Night Mayor | 2004-06-25 | 30 min |
| Season 6 | Episode 9 | Custody Battle / The City of Nutsvillle | 2004-07-02 | 30 min |
| Season 6 | Episode 10 | Aspirations | 2004-07-09 | 30 min |
| Season 6 | Episode 11 | That's Not My Baby! / Simian Says | 2004-07-16 | 30 min |
| Season 6 | Episode 12 | Sun Scream / The City of Frownsville | 2004-07-23 | 30 min |
| Season 6 | Episode 13 | West in Pieces | 2004-07-30 | 30 min |
| Season 6 | Episode 14 | Crazy Mixed Up Puffs / Mizzen in Action | 2004-08-20 | 30 min |
| Season 6 | Episode 15 | What's the Big Idea? / Roughing It Up | 2004-08-27 | 30 min |
